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bioconda / packages / gatk 3.8. 3. The full Genome Analysis Toolkit (GATK) framework, license restricted. conda install -c bioconda gatk(visit User's Guide > Tool documentation and Forums). In this workshop: use of GATK 4 for germline short variant calling in BioHPC environment The full Genome Analysis Toolkit (GATK) framework, v3. Homepage Versions: 3.8-11 , 3.8-10 , 3.8-9 , 3.8-8 , 3.8-7 , 3.8-5 , 3.8-4 , 3.8-3 , 3.8-2 ,. License. The versions of GATK in this repository are licensed by the Broad Institute and are made available for free to academic users for non-commercial use java -jar /software/gatk/3.8/static/GenomeAnalysisTK.jar -T RealignerTargetCreator -h. You should try looking at the help documentation for each of the GATK A genomic analysis toolkit focused on variant discovery. The GATK is the industry standard for identifying SNPs and indels in germline DNA and RNAseq data.

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